Hyphomicrobiaceae

Thiobacillus denitrificans, copyright T.E. Letain, S.I. Martin, H.R. Beller.

Belongs within: Chromatibacteria.

The Hyphomicrobiaceae are mostly aerobic, chemoheterotrophic bacteria, many of which are prosthecate and multiply by budding.

<==Hyphomicrobiaceae
    |--HyphomicrobiumCG03
    |    |--H. denitrificansLPV04
    |    |--H. facilisPHK96
    |    |--H. sulfonivorans Borodina, Kelly et al. 2002VP IJSEM02
    |    `--H. vulgarePHK96
    `--+--XanthobacterDT03
       |    |--+--X. autotrophicusDT03
       |    |  `--X. viscosus Doronina & Trotsenko 2003 [=Blastobacter viscosus (nom. inv.)]DT03
       |    `--+--X. tagetidisDT03
       |       `--+--X. agilisDT03
       |          `--+--Azorhizobium caulinodansDT03
       |             `--+--X. aminoxidans Doronina & Trotsenko 2003 [=Blastobacter aminooxidans (nom. inv.)]DT03
       |                `--X. flavusDT03 [=Mycobacterium flavumAS92]
       `--+--AncylobacterDT03
          |    |--A. aquaticus (Ørskov) Raj 1989 [=Microcyclus aquaticus Ørskov 1928]AS92
          |    `--A. eburneusAS92
          `--ThiobacillusDT03
               |--T. aquaesulisRK92
               |--T. delicatusRK92
               |--T. denitrificansG90
               |--T. intermediusK92
               |--T. kabobisPHK96
               |--T. neapolitanusK92
               |--T. novellusDT03
               |--T. perometabolisK92
               |--T. tepidariusRK92
               |--T. thioparus [incl. T. thiocyanoxidans]RK92
               |--T. thyasirisRK92
               `--T. versutus [incl. T. rapidicrescens]Z92
Hyphomicrobiaceae incertae sedis:
  AncalomicrobiumGH01
  AngulomicrobiumGH01
  AquabacterGH01
  BlastochlorisGH01
    |--B. sulfoviridis [=Rhodopseudomonas sulfoviridis]I01
    `--B. viridis [=Rhodopseudomonas viridis]I01
  DevosiaGH01
  DichotomicrobiumGH01
  FilomicrobiumGH01
  GemmigerGH01
  LabrysGH01
  MethylorhabdusGH01
  PedomicrobiumGH01
  ProsthecomicrobiumGH01
  Rhodomicrobium vannieliiGH01, I01
  SeliberiaGH01

*Type species of generic name indicated

References

[AS92] Aragno, M., & H. G. Schlegel. 1992. The mesophilic hydrogen-oxidizing (knallgas) bacteria. In: Balows, A., H. G. Trüper, M. Dworkin, W. Harder & K.-H. Schleifer (eds) The Prokaryotes: A handbook on the biology of bacteria: Ecophysiology, isolation, identification, applications 2nd ed. vol. 1 pp. 344–384. Springer-Verlag: New York.

[CG03] Cho, J.-C., & S. J. Giovannoni. 2003. Fulvimarina pelagi gen. nov., sp. nov., a marine bacterium that forms a deep evolutionary lineage of descent in the order ‘Rhizobiales’. International Journal of Systematic and Evolutionary Microbiology 53: 1853–1859.

[DT03] Doronina, N. V., & Y. A. Trotsenko. 2003. Reclassification of ‘Blastobacter viscosus’ 7d and ‘Blastobacter aminooxidans’ 14a as Xanthobacter viscosus sp. nov. and Xanthobacter aminoxidans sp. nov. International Journal of Systematic and Evolutionary Microbiology 53: 179–182.

[GH01] Garrity, G. M., & J. G. Holt. 2001. The road map to the Manual. In: Boone, D. R., R. W. Castenholz & G. M. Garrity (eds) Bergey’s Manual of Systematic Bacteriology 2nd ed. vol. 1. The Archaea and the Deeply Branching and Phototrophic Bacteria pp. 119–166. Springer.

[G90] Gray, T. R. G. 1990. Soil bacteria. In: Dindal, D. L. (ed.) Soil Biology Guide pp. 15–31. John Wiley & Sones: New York.

[IJSEM02] IJSEM. 2002. Validation list no. 85. Validation of publication of new names and new combinations previously effectively published outside the IJSEM. International Journal of Systematic and Evolutionary Microbiology 52: 685–690.

[I01] Imhoff, J. F. 2001. The anoxygenic phototrophic purple bacteria. In: Boone, D. R., R. W. Castenholz & G. M. Garrity (eds) Bergey’s Manual of Systematic Bacteriology 2nd ed. vol. 1. The Archaea and the Deeply Branching and Phototrophic Bacteria pp. 631–637. Springer.

[K92] Kelly, D. P. 1992. The chemolithotrophic prokaryotes. In: Balows, A., H. G. Trüper, M. Dworkin, W. Harder & K.-H. Schleifer (eds) The Prokaryotes: A handbook on the biology of bacteria: Ecophysiology, isolation, identification, applications 2nd ed. vol. 1 pp. 331–343. Springer-Verlag: New York.

[LPV04] Labbé, N., S. Parent & R. Villemur. 2004. Nitratireductor aquibiodomus gen. nov., sp. nov., a novel α-proteobacterium from the marine denitrification system of the Montreal Biodome (Canada). International Journal of Systematic and Evolutionary Microbiology 54: 269–273.

[PHK96] Prescott, L. M., J. P. Harley & D. A. Klein. 1996. Microbiology 3rd ed. Wm. C. Brown Publishers: Dubuque (Iowa).

[RK92] Robertson, L. A., & J. G. Kuenen. 1992. The colorless sulfur bacteria. In: Balows, A., H. G. Trüper, M. Dworkin, W. Harder & K.-H. Schleifer (eds) The Prokaryotes: A handbook on the biology of bacteria: Ecophysiology, isolation, identification, applications 2nd ed. vol. 1 pp. 385–413. Springer-Verlag: New York.

[Z92] Zumpft, W. G. 1992. The denitrifying prokaryotes. In: Balows, A., H. G. Trüper, M. Dworkin, W. Harder & K.-H. Schleifer (eds) The Prokaryotes: A handbook on the biology of bacteria: Ecophysiology, isolation, identification, applications 2nd ed. vol. 1 pp. 554–582. Springer-Verlag: New York.

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